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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatacttatgcaattcagtgttgacatctctgttgttaccttgttcactatgaatgctatttgaacagGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCTTTCATGGCATCAGGCAACATAAATTTGATTAACGATGTTATGAAAGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g37870.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665188|gb|CK053874.1|CK053874
EST:     GGACTTCTCAAGGATGCATACGTAGTTGTTAAG                         GACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT
genomic: GGACTTCTCAAGGATGCATACGTAGTTGTTAAGgtactatact ... atttgaacagGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT
EST: gi|29666485|gb|CB662760.1|CB662760
EST:     GTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAG                         GACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT
genomic: GTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAGgtactatact ... atttgaacagGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagtgttgacatctctgttgttaccttgttcactatgaatgctatttgaacagGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCTTTCATGGCATCAGGCAACATAAATTTGATTAACGATGTTATGAAAGCAG
     tgttgac  putative branch site (score: 3)
 tatttgaa  TA-rich tract