1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctgtattatataatctaagatcgttagccatttattattctgcccctctgcagtatgtatctttcccatgcaatgtactttataatggaacatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAA
species | Oryza sativa |
transcript | LOC_Os01g37770.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAG GTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGEST: gi|29670376|gb|CB666651.1|CB666651
genomic: AGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGgtatagctaa ... acatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGG
EST: AGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAG GTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGEST: gi|33665592|gb|CF296559.1|CF296559
genomic: AGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGgtatagctaa ... acatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGG
EST: GAAAATGAGGCAGAAGAAGAGGAG GTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGEST: gi|87010761|gb|CI312453.1|CI312453
genomic: GAAAATGAGGCAGAAGAAGAGGAGgtatagctaa ... acatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGG
EST: AGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAG GTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGG
genomic: AGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGgtatagctaa ... acatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGG
cctctgcagtatgtatctttcccatgcaatgtactttataatggaacatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAA
aatgtactttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtattatataatctaagatcgttagccatttattattctgcccctctgcagtatgtatctttcccatgcaatgtactttataatggaacatttatagGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgca