1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttctgttttttaacttggtgatccagcattggttggaagcaagcttagcgccattaaatttcatggtatctttatgcaagatgtgtgcttatatgctttccaactcttacagttgaattgcaaaacttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAG
species | Oryza sativa |
transcript | LOC_Os01g37770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAG TGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAACGAAAAGCTTGAEST: gi|29670377|gb|CB666652.1|CB666652
genomic: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGgttctgtttt ... ttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGA
EST: TTGAATGTCAAAAG TGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAEST: gi|66913764|gb|CX100612.1|CX100612
genomic: TTGAATGTCAAAAGgttctgtttt ... ttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGA
EST: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAG TGTACGAGGAATGAAATCAGAAGATCTTEST: gi|29670376|gb|CB666651.1|CB666651
genomic: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGgttctgtttt ... ttccatgcagTGTACGAGGAATGAAATCAGAAGATCTT
EST: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAG TGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAEST: gi|32948343|gb|BP184915.1|BP184915
genomic: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGgttctgtttt ... ttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGA
EST: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTATGAATGTCAAAAG TGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAEST: gi|88456108|gb|CI567674.1|CI567674
genomic: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGgttctgtttt ... ttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGA
EST: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAG TGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGA
genomic: GCACACACCGAAAAATATCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGgttctgtttt ... ttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGA
tgtgtgcttatatgctttccaactcttacagttgaattgcaaaacttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAG
ctcttac putative branch site (score: 39)
cttccat putative PPT
ttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgttttttaacttggtgatccagcattggttggaagcaagcttagcgccattaaatttcatggtatctttatgcaagatgtgtgcttatatgctttccaactcttacagttgaattgcaaaacttccatgcagTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA