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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtcaaaatggaacatttctgggatgtgagatactctgtttcgatcattattagatgcctacaacccatgtaattttttcttttttctttacctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAAAATGCAGCAGTGGTAGGCTGTCAATGTACTGGACCAACTATCCTGATAA

Basic information

species Oryza sativa
transcript LOC_Os01g35580.8
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88966558|gb|CI353110.1|CI353110
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|88472347|gb|CI409618.1|CI409618
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|89165456|gb|CI102546.1|CI102546
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|89161945|gb|CI102293.1|CI102293
EST:     TGACTTGGGGGTTGGATATGCGAACTTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: TGACTTGGGGGTTGGATATGCGAAC-TACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|87026087|gb|CI250103.1|CI250103
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|88269358|gb|CI380656.1|CI380656
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|88842916|gb|CI371816.1|CI371816
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCGATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|86427245|gb|CI072342.1|CI072342
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|88201871|gb|CI202226.1|CI202226
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|88248052|gb|CI246670.1|CI246670
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|86508583|gb|CI151216.1|CI151216
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|218504254|gb|FG949929.1|FG949929
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAAGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCAAC-A
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCA-CGA
EST: gi|157649986|gb|EX449620.1|EX449620
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|88978248|gb|CI384711.1|CI384711
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCGATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|89189825|gb|CI049364.1|CI049364
EST:     CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
EST: gi|109712352|gb|CI104960.1|CI104960
EST:     CCAGTCTCCTTACCAGGCATAA                         TTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA
genomic: CCAGTCTCCTTACCAGGCATAAgtaagttgtg ... acctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattattagatgcctacaacccatgtaattttttcttttttctttacctttgtagTTTCCAAGGTGCCAATTATGTTTCTTTACCTCTGGAATCTACAGTCACGAAAATGCAGCAGTGGTAGGCTGTCAATGTACTGGACCAACTATCCTGATAA
                       tgtaattttttctttt  CT-rich tract
                      atgtaattttttcttt  TA-rich tract