1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgcaacaaatgctctacccaaaccctccagtatgtttatttttgttcttttttttatggtgaatttctcattttttctgaatacatttttttttctcagTTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCATATCAAGCGGCATACACTACAGATGCAGAGAGAAATGACGCAGTTTCTC
species | Oryza sativa |
transcript | LOC_Os01g35580.8 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCCAAACTGGAAGGCATGGATTCAG TTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCAEST: gi|218504254|gb|FG949929.1|FG949929
genomic: GATCCAAACTGGAAGGCATGGATTCAGgttggttaac ... tttttctcagTTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCA
EST: GAAGCAACAGAAATAAAGATGATGATCCAAACTGGAAGGCATGGATTCAG TTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCA
genomic: GAAGCAACAGAAATAAAGATGATGATCCAAACTGGAAGGCATGGATTCAGgttggttaac ... tttttctcagTTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCA
ttcttttttttatggtgaatttctcattttttctgaatacatttttttttctcagTTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCATATCAAGCGGCATACACTACAGATGCAGAGAGAAATGACGCAGTTTCTC
tacatttttttttctc CT-rich tract
tcattttttctgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaacaaatgctctacccaaaccctccagtatgtttatttttgttcttttttttatggtgaatttctcattttttctgaatacatttttttttctcagTTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCATATCAAGCGGCATACACTACAGATGCAGAGAGAAATGACGCAGTTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -caacaaa
- - - - - - - - acccaaa
- - - - - - - - - - - -ccctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga