1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatctaaagcctcactgatattatgttgtttgctatacttggtataattacatcttttggattatttggttcaagtaagaaacattggtgaagcgtatcttcagttaggctgttcgggcaaaccttatatgacgtatcacgtatgtgcagATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAATTGAAGGGATAGCACAAGGACTCCTGTACCTACACAAGCACTCCCGTTT
species | Oryza sativa |
transcript | LOC_Os01g35160.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTG ATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAAEST: gi|88577470|gb|CI674059.1|CI674059
genomic: TTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTGgtatctaaag ... gtatgtgcagATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAA
EST: TTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTG ATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAAEST: gi|88321950|gb|CI673098.1|CI673098
genomic: TTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTGgtatctaaag ... gtatgtgcagATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAA
EST: TTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTG ATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAA
genomic: TTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTGgtatctaaag ... gtatgtgcagATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAA
tatcttcagttaggctgttcgggcaaaccttatatgacgtatcacgtatgtgcagATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAATTGAAGGGATAGCACAAGGACTCCTGTACCTACACAAGCACTCCCGTTT
ttatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctaaagcctcactgatattatgttgtttgctatacttggtataattacatcttttggattatttggttcaagtaagaaacattggtgaagcgtatcttcagttaggctgttcgggcaaaccttatatgacgtatcacgtatgtgcagATGAGCCAAATCAAAGAGCTTTGCTAGATTGGAACAAACGACTGGCAATAATTGAAGGGATAGCACAAGGACTCCTGTACCTACACAAGCACTCCCGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG