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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGAGTTGTTGTTTGACTTTGCATGCATAATACGTGCAACCAATAACTTCTCTCGAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAGgttaactatacttcgcatgaatagtgaatactgatcagttctaagaatggcctaacatgccacacaatcaagtcgttgctcataatttagattaatcccagtatttactgatcaacgccttaaattttcag

Basic information

species Oryza sativa
transcript LOC_Os01g35160.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88408645|gb|CI686150.1|CI686150
EST:     GAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAG                         GGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCT
genomic: GAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAGgttaactata ... aaattttcagGGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCT
EST: gi|88577470|gb|CI674059.1|CI674059
EST:     GAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAG                         GGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCT
genomic: GAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAGgttaactata ... aaattttcagGGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCT
EST: gi|88321950|gb|CI673098.1|CI673098
EST:     GAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAG                         GGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCT
genomic: GAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAGgttaactata ... aaattttcagGGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCT