1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtgctcttatgcatgtttatatactagctagctagcatcacttcgtgggtaagttctgaccgtgcatttttacagGCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTCCTGTTAACCGATTGCCTAGTAGAAGCACCACTGATGATGAAATGCGTCA
species | Oryza sativa |
transcript | LOC_Os01g35160.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAATCCTGGCTTCCACCAGTATGGTGACTTCCTAAATCTTCTAGGATAT GCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTCEST: gi|58683302|gb|CK071989.1|CK071989
genomic: GAAATCCTGGCTTCCACCAGTATGGTGACTTCCTAAATCTTCTAGGATATgtaagtgctc ... atttttacagGCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTC
EST: GAAATCCTGGCTTCCACCAGTATGGTGACTTCCTAAATCTTCTAGGATAT GCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTCEST: gi|86477354|gb|CI119987.1|CI119987
genomic: GAAATCCTGGCTTCCACCAGTATGGTGACTTCCTAAATCTTCTAGGATATgtaagtgctc ... atttttacagGCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTC
EST: GAAATCCTGGCTTCCACCAGTATGGTGACTTCCTAAATCTTCTAGGATAT GCCT-GCNAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGT
genomic: GAAATCCTGGCTTCCACCAGTATGGTGACTTCCTAAATCTTCTAGGATATgtaagtgctc ... atttttacagGCCTGGC-AGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGT
atactagctagctagcatcacttcgtgggtaagttctgaccgtgcatttttacagGCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTCCTGTTAACCGATTGCCTAGTAGAAGCACCACTGATGATGAAATGCGTCA
ttctgac putative branch site (score: 1)
cattttt putative PPT
atttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctcttatgcatgtttatatactagctagctagcatcacttcgtgggtaagttctgaccgtgcatttttacagGCCTGGCAGCTATGGACAGAGGGAAGATGGCTCAAACTCATAGATGTGGTCCTGTTAACCGATTGCCTAGTAGAAGCACCACTGATGATGAAATGCGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC