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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCAGTCCGCCGTCCGCGCGCTCCGGTGGGCAGTGCCGGCTTGCCGCCGTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataatctaatcccaattcccagatccagtccaagtcccactaatagaagcagtgatttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g35160.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88367457|gb|CI566423.1|CI566423
EST:     GTCACAGAGTCAAACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88379034|gb|CI681864.1|CI681864
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88458178|gb|CI695136.1|CI695136
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88851664|gb|CI674866.1|CI674866
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTACCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88358780|gb|CI649329.1|CI649329
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88313503|gb|CI671623.1|CI671623
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88592315|gb|CI710413.1|CI710413
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88579828|gb|CI691814.1|CI691814
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88590201|gb|CI709034.1|CI709034
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|58652619|gb|CK041299.1|CK041299
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
EST: gi|88371985|gb|CI681502.1|CI681502
EST:     GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAG                         GTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC
genomic: GTCACAGAGTCACACACACCCTGTCGAGCGAATATGCATGTCTTCTCAAGgtattataat ... gatttttcagGTCTAGCTAGCCATCCACTCGAACTCTCTTGTTCTTGTTACCCAGATCTAC