1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtctgttcagtaagatataactttaagatataacttggtccacttgatttgtgcaatatctaattttgtggttatgtttggatgaaaattttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCAAGTAGTGATTATGAACTTGGAAGAGTAAAACATCTAACTCAGGAAGGC
species | Oryza sativa |
transcript | LOC_Os01g33000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTTTCTTCTGGCCCTAG ACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCEST: gi|29681976|gb|CB678251.1|CB678251
genomic: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAGgtaattgtga ... tttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
EST: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAG ACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCEST: gi|29639168|gb|CB644177.1|CB644177
genomic: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAGgtaattgtga ... tttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
EST: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAG ACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCEST: gi|218494823|gb|FG945584.1|FG945584
genomic: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAGgtaattgtga ... tttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
EST: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTTTCTTCTGGCCCTAG ACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCEST: gi|29613964|gb|CB618977.1|CB618977
genomic: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAGgtaattgtga ... tttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
EST: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAG ACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCEST: gi|218480683|gb|FG945057.1|FG945057
genomic: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAGgtaattgtga ... tttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
EST: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTTTCTTCTGGCCCTAG ACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
genomic: ATCCAGCTCTATGGAGACCCCGCAGTCCTGCGACTGTCTTCTGGCCCTAGgtaattgtga ... tttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGC
tgatttgtgcaatatctaattttgtggttatgtttggatgaaaattttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCAAGTAGTGATTATGAACTTGGAAGAGTAAAACATCTAACTCAGGAAGGC
atctaat putative branch site (score: 22)
aatatctaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtctgttcagtaagatataactttaagatataacttggtccacttgatttgtgcaatatctaattttgtggttatgtttggatgaaaattttgaagcagACATATAATGGATGACAGTGATGGGGAGTATCATGATTCCAGCAGTGATGCAAGTAGTGATTATGAACTTGGAAGAGTAAAACATCTAACTCAGGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggatg