1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgccctgccctttgacttcctcgcgtggtagggttagatcgtagtaattacttgcggcagtgcgaccatttctgaatcggcggtggatttgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGGAGGAGGCCCCGCACTTCTTCCTCAGAGACGTGTGGGAGGCGTACAGGG
species | Oryza sativa |
transcript | LOC_Os01g33000.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGEST: gi|29639168|gb|CB644177.1|CB644177
genomic: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
EST: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGEST: gi|58599084|gb|CK009612.1|CK009612
genomic: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
EST: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGEST: gi|218494823|gb|FG945584.1|FG945584
genomic: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
EST: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGEST: gi|29613964|gb|CB618977.1|CB618977
genomic: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
EST: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGEST: gi|58656734|gb|CK045414.1|CK045414
genomic: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
EST: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGEST: gi|218480683|gb|FG945057.1|FG945057
genomic: GGTTCGTGGCCGCCGTGACGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
EST: CGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAG ATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
genomic: CGCCGTTCGTGCCTGCTCAGTTCCCCTCCAAGgttcgccctg ... tgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgccctgccctttgacttcctcgcgtggtagggttagatcgtagtaattacttgcggcagtgcgaccatttctgaatcggcggtggatttgggatgcagATGCAGAGAGCCGCGAGGGGGTGGCGGGGCTGCGGCGTGGATGCCGAGCGGGAGGAGGCCCCGCACTTCTTCCTCAGAGACGTGTGGGAGGCGTACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG