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gtacgccatctgttggttatttctaccgctgatacgaatcatatatcgattagtacttcagttgtgtgcatcgctgaaaaccatttggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCACCTATGTCAAGGAGAAGTATGGTAACCCCACAATGTTTCTATCTGAAA
species | Oryza sativa |
transcript | LOC_Os01g32364.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGAACGCGATGGCGTGCCAATTGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCEST: gi|87018970|gb|CI256855.1|CI256855
genomic: ATGAACGCGATGGCGTGCCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
EST: ATGAACGCGATGGCGTGCCAATTGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCEST: gi|86841673|gb|CI337369.1|CI337369
genomic: ATGAACGCGATGGCGTGCCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
EST: ATGAACGCGATGGCGTGCCAATTGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCEST: gi|86493335|gb|CI135968.1|CI135968
genomic: ATGAACGCGATGGCGTGCCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
EST: ATGAACGCGATGGCGTGCCAATTGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCEST: gi|86259344|gb|CI008021.1|CI008021
genomic: ATGAACGCGATGGCGTGCCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
EST: ATGAACGCGATGGCGTGCCAATTGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCEST: gi|86436220|gb|CI117942.1|CI117942
genomic: ATGAACGCGATGGCGTGCCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
EST: ATGAACGCGATGGCGTGCCAATTGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCEST: gi|86879899|gb|CI339981.1|CI339981
genomic: ATGAACGCGATGGCGTGCCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
EST: CCAAATGGACCAAGG GCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
genomic: CCAATTGGACCAAGGgtacgccatc ... ggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTC
tatatcgattagtacttcagttgtgtgcatcgctgaaaaccatttggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCACCTATGTCAAGGAGAAGTATGGTAACCCCACAATGTTTCTATCTGAAA
attagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccatctgttggttatttctaccgctgatacgaatcatatatcgattagtacttcagttgtgtgcatcgctgaaaaccatttggtcttgtagGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCACCTATGTCAAGGAGAAGTATGGTAACCCCACAATGTTTCTATCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT