1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctttataactgatgagatatatacagatcacaccacgttacacaacaaaaatacaaaatccctacgcacatatctgaaacaagttgattgacctttgtagGTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGATTGTCAAAGAACGGCTTCCGAAGTTCACGGCCGATGAGGTCCACATGGTG
species | Oryza sativa |
transcript | LOC_Os01g32364.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAGACTTCCACGTTGGATG GTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGATEST: gi|86847468|gb|CI287034.1|CI287034
genomic: ACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAGACTTCCACGTTGGATGgtatttttgc ... acctttgtagGTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGAT
EST: ACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAGACTTCCACGTTGGATG GTTTCTTCACCCAATCATCTATGEST: gi|218502918|gb|FG950848.1|FG950848
genomic: ACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAGACTTCCACGTTGGATGgtatttttgc ... acctttgtagGTTTCTTCACCCAATCATCTATG
EST: ACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAGACTTCCACGTTGGATG GTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGAT
genomic: ACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAGACTTCCACGTTGGATGgtatttttgc ... acctttgtagGTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGAT
caaaaatacaaaatccctacgcacatatctgaaacaagttgattgacctttgtagGTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGATTGTCAAAGAACGGCTTCCGAAGTTCACGGCCGATGAGGTCCACATGGTG
gattgac putative branch site (score: 12)
cctttgt CT-rich tract
atacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttataactgatgagatatatacagatcacaccacgttacacaacaaaaatacaaaatccctacgcacatatctgaaacaagttgattgacctttgtagGTTTCTTCACCCAATCATCTATGGTGAATACCCTAAATCGCTGCAAGTGATTGTCAAAGAACGGCTTCCGAAGTTCACGGCCGATGAGGTCCACATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - ctgatga
- - - - - - - - - - - - - - -acaccac
- - - - - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg