1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgtgtgtgtttataatatatttgttggttaactagtctgaatatgccatcgttaggtatgtatacacaatgaactaacatgatgcttgggatttacaacactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATGTAAGATGTATTA
species | Oryza sativa |
transcript | LOC_Os01g31360.6 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88436264|gb|CI519183.1|CI519183
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCGAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88220009|gb|CI219569.1|CI219569
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|86539310|gb|CI179516.1|CI179516
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: GCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|86907495|gb|CI296530.1|CI296530
genomic: GCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|86539319|gb|CI179525.1|CI179525
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|86859907|gb|CI321900.1|CI321900
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|89175396|gb|CI042417.1|CI042417
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|86539318|gb|CI179524.1|CI179524
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88476574|gb|CI413845.1|CI413845
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCGGCAAAAGAAGAGATCGAATCCTCAACTCCATTGCCGACTGNACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88319240|gb|CI515701.1|CI515701
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88690409|gb|CI734488.1|CI734488
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88286001|gb|CI515125.1|CI515125
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ATCAAATCCTCAACTCCATTGCCAAGTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88975210|gb|CI023461.1|CI023461
genomic: ATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88417785|gb|CI535944.1|CI535944
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88691280|gb|CI733864.1|CI733864
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|89175478|gb|CI042499.1|CI042499
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88690514|gb|CI734593.1|CI734593
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|88319314|gb|CI515775.1|CI515775
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: CCTGCGAAAGAAGAGATCGAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
genomic: CCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
aggtatgtatacacaatgaactaacatgatgcttgggatttacaacactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATGTAAGATGTATTA
aactaac putative branch site (score: 1)
atttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtgtgtttataatatatttgttggttaactagtctgaatatgccatcgttaggtatgtatacacaatgaactaacatgatgcttgggatttacaacactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATGTAAGATGTATTA
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