1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATATACCACTGAATAAACAACTATCTTCTGATCATGGATCTTCGCTTCTGATTAATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtctaaatgcatgcatttatgtgtcataattagcagttacttcttggctactcctgttattcatttttggcag
species | Oryza sativa |
transcript | LOC_Os01g31360.6 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCTTCTGATTAATGAAACGTCTGGTGGAACTACCGAACAAGAAAGCAAG GTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCATEST: gi|58664805|gb|CK053491.1|CK053491
genomic: CGCTTCTGATTAATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtct ... tttttggcagGTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCAT
EST: ATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAG GTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCATEST: gi|33381902|gb|CF197245.1|CF197245
genomic: ATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtct ... tttttggcagGTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCAT
EST: CGCTTCTGATTAATGAAACGTCTGGTGGAACTACCGAACAAGAAAGCAAG GTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCAT
genomic: CGCTTCTGATTAATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtct ... tttttggcagGTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATATACCACTGAATAAACAACTATCTTCTGATCATGGATCTTCGCTTCTGATTAATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtctaaatgcatgcatttatgtgtcataattagcagttacttcttggctactcctgttattcatttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG