1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAGgtagtcagccatgtgatgcatcctatcaacttttatgaatgaaatccatctcccacattttgttatagtgatacactaaaatatgtcctgaggttgtttt...
species | Oryza sativa |
transcript | LOC_Os01g31360.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAG GGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAEST: gi|58673000|gb|CK061686.1|CK061686
genomic: ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAGgtagtcagcc ... ctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
EST: ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAG GGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
genomic: ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAGgtagtcagcc ... ctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGTAGACGCTAATGCTAAATCTGGAGAGCAAGCTGAGCATAAAAATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAGgtagtcagccatgtgatgcatcctatcaacttttatgaatgaaatccatctcccacattttgttatagtgatacactaaaatatgtcctgaggttgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG