Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatattgattagtttatctgacttgtagggaacaagtttgctctcttcctaactaaatgtaaatatgtttctgaacacaaatatgcttctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAGGCAAAAGTAAAATGTCCAATAGTACAAGTGGCTTCTCCCAGAACCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g31360.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58664805|gb|CK053491.1|CK053491
EST:     ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAG                         GGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
genomic: ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAGgtagtcagcc ... ctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
EST: gi|58673000|gb|CK061686.1|CK061686
EST:     ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAG                         GGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
genomic: ATCATCTGAATAATGAATATTCTGGAAAACCAAATCAGTTTCCAAAGGAGgtagtcagcc ... ctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcctaactaaatgtaaatatgtttctgaacacaaatatgcttctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAGGCAAAAGTAAAATGTCCAATAGTACAAGTGGCTTCTCCCAGAACCAAG
                                        tgcttctcc  CT-rich tract
      taactaaatgtaaata  TA-rich tract