1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTATGGGTGTCATAACTGAAATTGGTGCAACAGACACTCTACGCCCAAAATCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctacaatatagactgaaatttccctttgttataaacttcctttaccttatattatccacactaactattgaatcatttgtttggctctttgaaacctttctaatag
species | Oryza sativa |
transcript | LOC_Os01g29390.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|38478879|gb|CF963012.1|CF963012
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGCCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|89190931|gb|CI392784.1|CI392784
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|88275732|gb|CI396336.1|CI396336
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|86868722|gb|CI333099.1|CI333099
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|88970727|gb|CI385387.1|CI385387
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: AGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|313079212|gb|HO663793.1|HO663793
genomic: AGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAACAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGT--GGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|157650503|gb|EX450137.1|EX450137
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACEST: gi|86844233|gb|CI337612.1|CI337612
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCAC
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|88559283|gb|CI489848.1|CI489848
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCAEST: gi|88547021|gb|CI477289.1|CI477289
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
EST: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAG CAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
genomic: TCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctaca ... tttctaatagCAATGTCAGGCAAGCATCCGAGCACAATTTTCACTGATCAAGACGCAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGGGTGTCATAACTGAAATTGGTGCAACAGACACTCTACGCCCAAAATCAAGAAACACAGAAACTTTGAAAAGAACAATGCAGATTTGGGATGCAAGgtaagctacaatatagactgaaatttccctttgttataaacttcctttaccttatattatccacactaactattgaatcatttgtttggctctttgaaacctttctaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT