1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaccagtaactatccactgtgcataaatcatacattttagagcattttggatttttcgcatatttcggtgtttaattgcataacgtgtactttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTTACAAG
species | Oryza sativa |
transcript | LOC_Os01g29104.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCG ATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTTEST: gi|218499312|gb|FG963720.1|FG963720
genomic: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCGgtgagcaccc ... ctttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTT
EST: GCGAGCCGTTGCTGTCACCAAGACCCTGGAAAAGTTCAACCTAACCCGCG ATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGCTGACTTTTTCCAGTTEST: gi|88482001|gb|CI419272.1|CI419272
genomic: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCGgtgagcaccc ... ctttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTT
EST: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCG ATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTTEST: gi|88535251|gb|CI464041.1|CI464041
genomic: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCGgtgagcaccc ... ctttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTT
EST: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCG ATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTT
genomic: GCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCGgtgagcaccc ... ctttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTT
ttttggatttttcgcatatttcggtgtttaattgcataacgtgtactttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTTACAAG
gcataac putative branch site (score: 3)
tgtttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaccagtaactatccactgtgcataaatcatacattttagagcattttggatttttcgcatatttcggtgtttaattgcataacgtgtactttgtatagATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - -gtgcata
- - - - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcata