1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGgtgagccattgttggattactcgcgcacaaaccatccctgtgacctcacaaccttcgtgcatgccttcctatag
species | Oryza sativa |
transcript | LOC_Os01g29104.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGTTTCCGCCTCCTCCG CAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCGEST: gi|218499312|gb|FG963720.1|FG963720
genomic: TCGTTTCCGCCTCCTCCGgtgagccatt ... cttcctatagCAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCG
EST: GTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCG C---TCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCG
genomic: GTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGgtgagccatt ... cttcctatagCAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGgtgagccattgttggattactcgcgcacaaaccatccctgtgacctcacaaccttcgtgcatgccttcctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC