1 5' 3' | 2 5' 3' | 3 5' 3' |
CGTATTGAAGAAGAAAAAGATAAATCAAATGGCTGATAACTCTGGATATCCATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagcaataattctcagaacttattgtttatgcaaccttcttccatcttctcaggatattgttaaaacattaactcatctcaagtttttcttagtt...
species | Oryza sativa |
transcript | LOC_Os01g28810.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAG TCCTTTC-TTATTAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGEST: gi|88337448|gb|CI630745.1|CI630745
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAG TCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGEST: gi|55435717|gb|CV730991.1|CV730991
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAG TCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGEST: gi|88383868|gb|CI631758.1|CI631758
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCACAATAAG TCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTATTGAAGAAGAAAAAGATAAATCAAATGGCTGATAACTCTGGATATCCATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagcaataattctcagaacttattgtttatgcaaccttcttccatcttctcaggatattgttaaaacattaactcatctcaagtttttcttagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA