1 5' 3' | 2 5' 3' | 3 5' 3' |
...catatgcattactaatatatatataggttatctagcacatgaaatttaaatatgttgtaagagactggataaactaacatggcatgaattgtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGAAAAAGAATTACGCAATCAAGTTGCAGGAGTTCAATAGTATATGCAGTA
species | Oryza sativa |
transcript | LOC_Os01g28810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAG TCCTTTC-TTATTAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGEST: gi|88337448|gb|CI630745.1|CI630745
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAG TCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGEST: gi|55435717|gb|CV730991.1|CV730991
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAG TCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGEST: gi|88383868|gb|CI631758.1|CI631758
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
EST: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCACAATAAG TCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
genomic: CATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGgtcaaaagca ... gtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAG
ttaaatatgttgtaagagactggataaactaacatggcatgaattgtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGAAAAAGAATTACGCAATCAAGTTGCAGGAGTTCAATAGTATATGCAGTA
aactaac putative branch site (score: 3)
ataaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatgcattactaatatatatataggttatctagcacatgaaatttaaatatgttgtaagagactggataaactaacatggcatgaattgtgaaaacagTCCCTCCAGCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGAAAAAGAATTACGCAATCAAGTTGCAGGAGTTCAATAGTATATGCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- -atgcatt
- - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa