1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaacttgctttatgctaaaaagaaccatactatgcctttcttgattatatgtcttaattaatgtactgactcttgctgttgaattaacttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGGACTTAAACTTAATGGGGTAAACCCCTAGTCGGTGTGTTTGAGGATTGGG
species | Oryza sativa |
transcript | LOC_Os01g27449.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAG GTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGGEST: gi|88526534|gb|CI454602.1|CI454602
genomic: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGgcaagttcca ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGG
EST: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAG GTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGGEST: gi|33689302|gb|CF317541.1|CF317541
genomic: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGgcaagttcca ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGG
EST: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAG GTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGGEST: gi|218479206|gb|FG957478.1|FG957478
genomic: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGgcaagttcca ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGG
EST: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAG GTTTTAGCATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTEST: gi|88502738|gb|CI430244.1|CI430244
genomic: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGgcaagttcca ... ttgcttgcagGTTTTAG-ATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCT
EST: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAG GTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGG
genomic: GCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGgcaagttcca ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGG
tatatgtcttaattaatgtactgactcttgctgttgaattaacttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGGACTTAAACTTAATGGGGTAAACCCCTAGTCGGTGTGTTTGAGGATTGGG
cttttgctt CT-rich tract
tcttaattaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacttgctttatgctaaaaagaaccatactatgcctttcttgattatatgtcttaattaatgtactgactcttgctgttgaattaacttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCAGGTGATTGACTGCTTCTTCTAGGACTTAAACTTAATGGGGTAAACCCCTAGTCGGTGTGTTTGAGGATTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- -cttgctt
- - - - - tatgcta
- - - - - - - - -aaaagaa
- - - - - - - - - - - - - - -ctatgcc
- - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg