1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCCTCATGAACCCCTGCCAGTGGTGCAGCGAGCTTGGAGATCGGCATCGTCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGgtgagtcacagttcaattcctcgggcataaagctttcctgagacctattcaacaccgtgtgtatgcatgcatggtag
species | Oryza sativa |
transcript | LOC_Os01g27449.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCG ATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCTCCCTGCCGTEST: gi|218479206|gb|FG957478.1|FG957478
genomic: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGgtgagtcaca ... tgcatggtagATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCTCCCTGCCGT
EST: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCG ATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCTCCCTGCCGTEST: gi|33822376|gb|CF337000.1|CF337000
genomic: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGgtgagtcaca ... tgcatggtagATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCTCCCTGCCGT
EST: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCG ATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCTCCCTGCCGTEST: gi|88328426|gb|CI676631.1|CI676631
genomic: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGgtgagtcaca ... tgcatggtagATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCTCCCTGCCGT
EST: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCG ATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCG
genomic: TCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGgtgagtcaca ... tgcatggtagATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTCATGAACCCCTGCCAGTGGTGCAGCGAGCTTGGAGATCGGCATCGTCTTCCCCAATTCCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGgtgagtcacagttcaattcctcgggcataaagctttcctgagacctattcaacaccgtgtgtatgcatgcatggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT