1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGAGAGAGTGACAGAGGTGTTTCCTGCACTTTTGGTGCAGATAAGCTTGTAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcactaattattttgatctttattttgtctgttgagatctatataacaatttcagcatgaatgtctttag
species | Oryza sativa |
transcript | LOC_Os01g24750.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGAATGATNCTTGATCCTTANAATGCCGCGCTCATCAG GTTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATEST: gi|38470216|gb|CF954347.1|CF954347
genomic: AAGAATGAT-CTTGAT-CTTA-TATGCCGCGCTCATCAGgtaagcacta ... atgtctttagG-TTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAAT
EST: AGAATTTTTGGAGAAGAATGATCTTGAGTCGTATATGCCGCGCTCATCAG GTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATCEST: gi|29640983|gb|CB645990.1|CB645990
genomic: AGAATTTTTGGAGAAGAATGATCTTGA-TCTTATATGCCGCGCTCATCAGgtaagcacta ... atgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
EST: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAG GTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATCEST: gi|86496183|gb|CI138816.1|CI138816
genomic: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcacta ... atgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
EST: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAG GTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATCEST: gi|29614158|gb|CB619171.1|CB619171
genomic: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcacta ... atgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
EST: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAG GTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATCEST: gi|58610876|gb|CK038588.1|CK038588
genomic: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcacta ... atgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
EST: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAG GTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATCEST: gi|29669872|gb|CB666147.1|CB666147
genomic: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcacta ... atgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
EST: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAG GTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
genomic: TAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcacta ... atgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGAGAGTGACAGAGGTGTTTCCTGCACTTTTGGTGCAGATAAGCTTGTAGAATTTTTGGAGAAGAATGATCTTGATCTTATATGCCGCGCTCATCAGgtaagcactaattattttgatctttattttgtctgttgagatctatataacaatttcagcatgaatgtctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA