1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGTCGGAGGCGGAGATCCGGCAGCTCTGCGTCGAGGCGAAGCGGGTGCTCCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCGgtgagcgacgccccctccccttcccaactctagccctgattcgtgttcgatttggcgcgtgagggtttgcgcatttccggggcggaattccgcgattccg...
species | Oryza sativa |
transcript | LOC_Os01g24750.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCG GTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCGEST: gi|42793981|gb|AB117880.1|AB117880
genomic: CCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCGgtgagcgacg ... ttgcatgcagGTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCG
EST: CCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCG GTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCGEST: gi|38468716|gb|CF952847.1|CF952847
genomic: CCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCGgtgagcgacg ... ttgcatgcagGTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCG
EST: CCTGTC-CAGCCGAA-CTCCTGCGCATCCACGCCCCCGTCAAGATCTGCG GTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCGEST: gi|58594002|gb|CF992310.1|CF992310
genomic: CCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCGgtgagcgacg ... ttgcatgcagGTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCG
EST: GGGGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCG GTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCG
genomic: CCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCGgtgagcgacg ... ttgcatgcagGTGATATCCATGGGCAATTTGTTGATCTTCTGAGGCTGTTTGATTTGGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCGGAGGCGGAGATCCGGCAGCTCTGCGTCGAGGCGAAGCGGGTGCTCCTGTCGCAGCCGAACCTCCTGCGCATCCACGCCCCCGTCAAGATCTGCGgtgagcgacgccccctccccttcccaactctagccctgattcgtgttcgatttggcgcgtgagggtttgcgcatttccggggcggaattccgcgattccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggcgg