1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattcagacatgtgaatctgtgacactcctcgttaattttaaacttggttatagtttgtttacgatatgagcttttgttactgtctgcag
species | Oryza sativa |
transcript | LOC_Os01g22510.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAEST: gi|33816970|gb|CF334318.1|CF334318
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAEST: gi|33676318|gb|CF304557.1|CF304557
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: GGGTGCTGTTCGTTTCTTTCNTAAAAGCTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAEST: gi|18386325|gb|BM419524.1|BM419524
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: GGGTGCTGTTCGTTTCTTTCCTAAAAGCGTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAEST: gi|33675987|gb|CF304226.1|CF304226
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGC-TCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAEST: gi|87025583|gb|CI254629.1|CI254629
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAEST: gi|86852194|gb|CI319129.1|CI319129
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: CATCCTCTTGCAGA-TACAA CTGAC-GT-GCTTATGAAGTTCCT-AAATTTT-GCACCTGTTGCGTCAEST: gi|33685901|gb|CF314140.1|CF314140
genomic: CATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
EST: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAA CTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
genomic: GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattc ... ctgtctgcagCTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGCTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAgtgagaattcagacatgtgaatctgtgacactcctcgttaattttaaacttggttatagtttgtttacgatatgagcttttgttactgtctgcag
- - GCTGTT
- - - - - - - - - - - - AGCTCA