1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattttgcattaacttgattttgtttatatattagtctatgccactttctttcaattttaacactgacacacacgcatcgcatgcatacaattattacagATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATACTTGGTCGAGATGTAGAATTTTCGTGGCTAGCTCGAAACATGACA
species | Oryza sativa |
transcript | LOC_Os01g22510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGAACGTGAGACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAG ATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATAEST: gi|87025583|gb|CI254629.1|CI254629
genomic: CAGAACGTGAGACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAGgtgcctgtta ... attattacagATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATA
EST: CAGAACGTGAGACCATTCCTCAATGGATNCCATTTATCTCATCTGTCAAG ATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATAEST: gi|33685901|gb|CF314140.1|CF314140
genomic: CAGAACGTGAGACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAGgtgcctgtta ... attattacagATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATA
EST: CAGAACGTGAGACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAG ATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATA
genomic: CAGAACGTGAGACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAGgtgcctgtta ... attattacagATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATA
tttctttcaattttaacactgacacacacgcatcgcatgcatacaattattacagATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATACTTGGTCGAGATGTAGAATTTTCGTGGCTAGCTCGAAACATGACA
cactgac putative branch site (score: 32)
atacaattattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttgcattaacttgattttgtttatatattagtctatgccactttctttcaattttaacactgacacacacgcatcgcatgcatacaattattacagATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATACTTGGTCGAGATGTAGAATTTTCGTGGCTAGCTCGAAACATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- ttttgca
- - - - - - - - - - - - - - - - - - ctatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatac