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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCgtacgtacttgtgttctgtccactgacgcgattatttttctccaagctagctaagcccattattcaattcttatcgcttcgcgcgttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g21630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g21630.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G164134_T01 (Zea mays), 5'ss of exon 6
GCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCG---CCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCgtacgtacttgtgttctgtccactgacgcgattatttttctccaagctagctaagcccat-tattcaattcttatcgcttcgcgcgttgcag-----------------------
   | || || | ||| || ||||||||||||||||||||| || ||||  |||   || ||  |||||||||| |||||||||||||||||| ||||||||||| ||||| ||||  |||| |  |||  |  ||  ||   |||  ||| |||    ||   |   ||     |    ||   |     ||||                       
---GTCTGGCGGTGATACTGCACTGCGACCAGCTCCGCGCCTTCTTCCCGTCCGGCTCCACCGTCGTCAAGTGCATCTCCGACGGCGGCCTCTACCTCGACGCgtgcgtacctgtgcgctgtgctttgaacc--ttccttccttccgtgctcgctcgctccgcgtgggcatgcaatgcaactgaactgacagcaggatctttgccaccataaccgcag

upper sequence: LOC_Os01g21630.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G066500_T01 (Zea mays), 5'ss of exon 3
--GCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCgtacgtacttgtgttctgtccactgacgcga--------ttatttttctccaagctagctaagcc----cattattcaattcttatcgctt-cgcgcgttgcag
  ||   ||  || || |||  ||  ||  ||  | ||| ||  | | | || || |  | ||||||||||||||| |||||| |||||||||||||||||||||||||| || |        ||  |    |        |||||| | |    | ||    | |     ||||  || ||   |||| ||   ||  | |||||
AGGCCTTCTTCCCTCGGTCCAACAACGCCGCCGCCGCCG-GCGGTAC-CACCACCACTACTACCGTCAAGTGCCTCGCCGACGCCGGCCTCTTCCTCGACGCgtacgtacgtgggggagacgtaccaaattaacgaaccttttatttatttgtttgttacagtatctgttgcattgctccatcaatatctctggtgcctggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87020132|gb|CI277864.1|CI277864
EST:     CGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGC                         CGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGT
genomic: CGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCgtacgtactt ... cgcgttgcagCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGT