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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGgtgatcaatcaaacccatccagctagcagctgatccgatcattcctgattagctaagaatcaatggacttgtgtatag

Basic information

species Oryza sativa
transcript LOC_Os01g21630.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g21630.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G066500_T01 (Zea mays), 5'ss of exon 2
ATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGgtgatcaatcaaacccatccagctagcagctgatccgatcat--tcctgattagctaagaatcaatggacttgtgtatag--------------------
||||| ||| ||||||||| || |||||||||||||||||| ||| ||||||||||||||| |||||| || |||        ||| ||    |  |||        |    | |   |   || ||  |   |||       ||| || ||                      
ATTTCTACAACTGGAACCGGGTGAAGATCCGCTACTGCGACGGCGCGTCCTTCGCCGGCGAAGCCTTCGACAAGgcacagcgacaaccctcgtcgtctatatatcattttttttagaatagggaatatattgaaatattccagcttctgcatcaatagatgcatgtggctgttc