1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatattcctaagcctggatgttactgtctgtgtttcacaattttttttacatcataattgcataagaatttcgggaagtttcatttgagatcatg...
species | Oryza sativa |
transcript | LOC_Os01g20900.5 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGG ATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCCEST: gi|88486205|gb|CI423476.1|CI423476
genomic: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatat ... tggcaaatagATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCC
EST: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGG ATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCCEST: gi|88262082|gb|CI365658.1|CI365658
genomic: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatat ... tggcaaatagATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCC
EST: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGG ATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCCEST: gi|88259719|gb|CI364012.1|CI364012
genomic: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatat ... tggcaaatagATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCC
EST: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGG ATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCCEST: gi|86600499|gb|CI356256.1|CI356256
genomic: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatat ... tggcaaatagATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCC
EST: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGG ATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCC
genomic: GCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatat ... tggcaaatagATGGCTGCTGTGGCTGCGCTGTGCATACAATTCGAGGCGGAATTTCGGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtaataatattcctaagcctggatgttactgtctgtgtttcacaattttttttacatcataattgcataagaatttcgggaagtttcatttgagatcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT