1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGATGTCTACGCCTTTGGGGTTGTATTGTTGGAGCTTTTAACTGGTCGCAAAGTATTTGATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGGgtaaacatgcatgcttgcattcgctgatctaatttcttcataggatcaagaagctaattaacctgttgataatgagatgcag
species | Oryza sativa |
transcript | LOC_Os01g20900.5 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGG GCTACACC-AGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAGEST: gi|88486205|gb|CI423476.1|CI423476
genomic: GATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGGgtaaacatgc ... tgagatgcagGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
EST: CCAGATGAGCCTTGTAAAATGG GCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAGEST: gi|88262082|gb|CI365658.1|CI365658
genomic: CCAGATGAGCCTTGTAAAATGGgtaaacatgc ... tgagatgcagGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
EST: AAGTATTTGATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGG GCTACACCAAGGCTTAGTAAAGACAAGGGTGAAACAATGCGTAGATCCAAAEST: gi|88259719|gb|CI364012.1|CI364012
genomic: AAGTATTTGATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGGgtaaacatgc ... tgagatgcagGCTACACCAAGGCTTAGTAAAGACAA-GGTGAAACAATGCGTAGATCCAAA
EST: ATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGG GCTACACCAAGGCTTAGTAAAGACAAGGTGGAACAATGCGTAGATCCAAAGEST: gi|86600499|gb|CI356256.1|CI356256
genomic: ATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGGgtaaacatgc ... tgagatgcagGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
EST: TTGTAAAATGG GCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
genomic: TTGTAAAATGGgtaaacatgc ... tgagatgcagGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGTCTACGCCTTTGGGGTTGTATTGTTGGAGCTTTTAACTGGTCGCAAAGTATTTGATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGGgtaaacatgcatgcttgcattcgctgatctaatttcttcataggatcaagaagctaattaacctgttgataatgagatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG