1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGgttagattacttgcaacctctgaactttgacgtactttcttactgaagaagtccttaacatttccttttcttgctgcag
species | Oryza sativa |
transcript | LOC_Os01g19800.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAG GAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAAEST: gi|86879188|gb|CI315507.1|CI315507
genomic: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGgttagattac ... cttgctgcagGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAA
EST: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCACCTGCAGCTGCTCCAG GAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAAEST: gi|88432089|gb|CI562920.1|CI562920
genomic: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGgttagattac ... cttgctgcagGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAA
EST: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAG GAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAAEST: gi|88458035|gb|CI542217.1|CI542217
genomic: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGgttagattac ... cttgctgcagGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAA
EST: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCANCTGCTCCAG GAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAA
genomic: TCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGgttagattac ... cttgctgcagGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGgttagattacttgcaacctctgaactttgacgtactttcttactgaagaagtccttaacatttccttttcttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT