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gtgagtttaattggacgacccatctgaatgctatccaatgcatatataaaaaatggattggtgattcagaatttcagagtggtttgacgcaatgaacatgtgttggtttgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGC
species | Oryza sativa |
transcript | LOC_Os01g19800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACG ATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCACGEST: gi|86879188|gb|CI315507.1|CI315507
genomic: CTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGgtgagtttaa ... tgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATG
EST: CTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACG ATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGEST: gi|88432089|gb|CI562920.1|CI562920
genomic: CTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGgtgagtttaa ... tgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATG
EST: CTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACG ATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCACGEST: gi|88458035|gb|CI542217.1|CI542217
genomic: CTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGgtgagtttaa ... tgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATG
EST: TCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACG ATATACTTGCTCCGGGCTAGTGGAATCTTGCTNCCGTTCTACGTCGTCACG
genomic: TCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGgtgagtttaa ... tgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATG
attcagaatttcagagtggtttgacgcaatgaacatgtgttggtttgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGC
gtttgac putative branch site (score: 4)
tttgcttt putative PPT
aatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttaattggacgacccatctgaatgctatccaatgcatatataaaaaatggattggtgattcagaatttcagagtggtttgacgcaatgaacatgtgttggtttgctttgcagATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG