1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgacaaataaatatgctcagttgatagagttgaacaaaacaaagttcaccatcaagcacagaaaacttttttgcttcttatgacttggtagttt...
species | Oryza sativa |
transcript | LOC_Os01g19140.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG TATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGAEST: gi|88542580|gb|CI471919.1|CI471919
genomic: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgac ... actggtacagTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGA
EST: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG TATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGAEST: gi|88539531|gb|CI469490.1|CI469490
genomic: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgac ... actggtacagTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGA
EST: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG TATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGAEST: gi|29632720|gb|CB637729.1|CB637729
genomic: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgac ... actggtacagTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGA
EST: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG TATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGAEST: gi|33799323|gb|CF325519.1|CF325519
genomic: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgac ... actggtacagTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGA
EST: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG TATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGA
genomic: CAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgac ... actggtacagTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGATGGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAGgtaacgtgacaaataaatatgctcagttgatagagttgaacaaaacaaagttcaccatcaagcacagaaaacttttttgcttcttatgacttggtagttt
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa