1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catttgaacttatttttgactgcttcttccgtacagagtacagattcctcctaattattcttaagcaatttgcacataattctggcatatgcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG
species | Oryza sativa |
transcript | LOC_Os01g19140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|88542580|gb|CI471919.1|CI471919
genomic: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATGgtaaaaagtt ... gcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|88539531|gb|CI469490.1|CI469490
genomic: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATGgtaaaaagtt ... gcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|29632720|gb|CB637729.1|CB637729
genomic: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATGgtaaaaagtt ... gcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGTTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|33799323|gb|CF325519.1|CF325519
genomic: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATGgtaaaaagtt ... gcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|29657761|gb|CB654036.1|CB654036
genomic: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATGgtaaaaagtt ... gcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATG GTGTCATGATTGCTT
genomic: GAATGGCCTACAGCTCGTATGCCCTCCACCAAGGCTTTGCACTGACAATGgtaaaaagtt ... gcttttgcagGTGTCATGATTGCTT
tcctcctaattattcttaagcaatttgcacataattctggcatatgcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG
tcctaat putative branch site (score: 6)
tgctttt putative PPT
taattattcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgaacttatttttgactgcttcttccgtacagagtacagattcctcctaattattcttaagcaatttgcacataattctggcatatgcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - tgcttct
- - - - - - - - - - - - - - ccgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctggc