1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCCGCCGCGTCGCGCGCGCTGGACGACCTCCGCCTCGACCTCGTCCACCTCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaaccaactaaaaatatccccgcgtttatctacaaaactaaccaatctcataatagtaattaattctagaacaattttatcgtgttgtgatcaacataaacctatatatgcaaataaattgctgctagttaatctcatcattgatttattattgtttatttggatgcgatgcatgcag
species | Oryza sativa |
transcript | LOC_Os01g18870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAG ATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATTEST: gi|86503974|gb|CI146607.1|CI146607
genomic: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaa ... atgcatgcagATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
EST: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAG ATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATTEST: gi|86483410|gb|CI126043.1|CI126043
genomic: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaa ... atgcatgcagATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
EST: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAG ATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATTEST: gi|88224916|gb|CI224438.1|CI224438
genomic: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaa ... atgcatgcagATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
EST: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAG ATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATTEST: gi|163918534|gb|EG714344.1|EG714344
genomic: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaa ... atgcatgcagATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
EST: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAG ATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATTEST: gi|88962024|gb|CI097177.1|CI097177
genomic: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaa ... atgcatgcagATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
EST: TCTCCGGCGGCAAGATCGGCGACTGCCAAATCTACATGTTCAACACCAAG ATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
genomic: TCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaa ... atgcatgcagATTCATTCGGGATCTCCAGTGTTTGCAAGTGCAGTGGCCAGCAGGCTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCGCGTCGCGCGCGCTGGACGACCTCCGCCTCGACCTCGTCCACCTCTCCGGCGGCAAGATCGGCGACTGCCACATCTACATGTTCAACACCAAGgtcacaacaaccaactaaaaatatccccgcgtttatctacaaaactaaccaatctcataatagtaattaattctagaacaattttatcgtgttgtgatcaacataaacctatatatgcaaataaattgctgctagttaatctcatcattgatttattattgtttatttggatgcgatgcatgcag
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