1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatgcttggacgattttgagtttgttctttaaatttgggcttgaacataggttgattaagcgagaagagtttcatggtttggattcttgatttgttgcagGTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCCGCTTGAGAGCCTGGAGATGGACGTCGGCCAGTCGCACCTCGCCGCCGCC
species | Oryza sativa |
transcript | LOC_Os01g18870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCTGCGCTGCGAGCTCAAGTGATCGATCTGAGCTCTGAAGAAAAAG GTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCCEST: gi|58657157|gb|CK045837.1|CK045837
genomic: CCCTGCTGCACTGCGAGCTCAAGTAATCGATCTGAGCTCTGAAGAAAAAGgtctgtttca ... tttgttgcagGTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCC
EST: CCCTTCTGCACTGCGAGCTCAAGTGATCGATCTGAGCTCTGAAGAAAAAG GTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCC
genomic: CCCTGCTGCACTGCGAGCTCAAGTAATCGATCTGAGCTCTGAAGAAAAAGgtctgtttca ... tttgttgcagGTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCC
cataggttgattaagcgagaagagtttcatggtttggattcttgatttgttgcagGTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCCGCTTGAGAGCCTGGAGATGGACGTCGGCCAGTCGCACCTCGCCGCCGCC
tcttgat putative branch site (score: 4)
ttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcttggacgattttgagtttgttctttaaatttgggcttgaacataggttgattaagcgagaagagtttcatggtttggattcttgatttgttgcagGTGGTAGAGTGCGAGGAAGATGTATCACCCGCAGTGCGAGCTCCTGATGCCGCTTGAGAGCCTGGAGATGGACGTCGGCCAGTCGCACCTCGCCGCCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-atgcttg
- - - - - - - - - - -ttgttct
- - - - - - - - - - - - - - - - - - - - - gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - gttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg