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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGgtaagccttatataacattttactagttgataccctgctgaaatatcttattacgcatgtggtaaggaaggtgtcattttgaacaaattctatggttgca...

Basic information

species Oryza sativa
transcript LOC_Os01g17180.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g17180.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G079196_T01 (Zea mays), 5'ss of exon 3
GTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGgtaagccttatataacattttactagttgataccctgctgaaatatcttattacgcatgtggtaaggaaggtgtcattttgaacaaattct-atggttgca-
|| |||| ||||||||||| ||||||||||||||||| || |||||||| ||  ||||||||||||||||||||||||||||||  |   |   || | || |     |||   | |||    || |  ||  || |||     |||  || | | |   ||    |  | ||  |     
GTTTGGTCGAGACAGACCCAGAGGGTGCACTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatccaaattcaatctattcaac-atattattctgtctcatttgcttttgc-tgttcctgggacagtatgaatgctaaagtgtattgatcatcttgg

upper sequence: LOC_Os01g17180.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G132804_T01 (Zea mays), 5'ss of exon 3
GTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGgtaagccttatataacattttactagttgataccctgctgaaatatct-tattacgcatgtggtaaggaaggtgtcattttgaacaaat-tctatggttgca
|| |||||||||||||||| ||||||||||||||||| || |||||||||||  |||||||||||||||| |||||||||||||    | ||   ||||   ||       | ||  |        | | ||   | |||      ||  || | | |   ||    | | |||       
GTTTGGTTGAGACAGACCCAGAGGGTGCACTTGCTGGTTTTGATCAAGTAGTCAGTATGGAGCCTGAAAAAGCTGAATGgtaagtgaga-attcgatttatttaacattctctctattctgtctcatatgtttttcctgttcctgtgacagtatgaatgctaaagtgtatttatcagcct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6431605|gb|AU081257.1|AU081257
EST:     CTTGCTGGCTTCGATCAAGTAGTACGTATGGANCCTGAAAAGGCTGAATG                         GGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAA
genomic: CTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGgtaagcctta ... ttctttatagGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAA
EST: gi|6431604|gb|AU081256.1|AU081256
EST:     CTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATG                         GGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAA
genomic: CTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGgtaagcctta ... ttctttatagGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAA
EST: gi|86532861|gb|CI173067.1|CI173067
EST:     CTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATG                         GGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAA
genomic: CTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGgtaagcctta ... ttctttatagGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAA