1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGgttcgcttccaatctctttcattcttgtgtttcctcggcggtgcgttttctcggaccctgtgtatgtagtgtggtagtgtagtattcgaggagaggccac...
species | Oryza sativa |
transcript | LOC_Os01g17180.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCAGTACTACAACTCCAAAG GTCTGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGEST: gi|6431604|gb|AU081256.1|AU081256
genomic: ACCAGTACTACAACTCCAAAGgttcgcttcc ... cttattacagGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAG
EST: GATGTTGACATCGAGAACCAGTACTACAACTCCAAAG GTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAG
genomic: GATGTTGACATCGAGAACCAGTACTACAACTCCAAAGgttcgcttcc ... cttattacagGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGgttcgcttccaatctctttcattcttgtgtttcctcggcggtgcgttttctcggaccctgtgtatgtagtgtggtagtgtagtattcgaggagaggccac
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagagg