1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttgcccatttagaagtgattgcccatatattgtatcatgtttacacagtattgtattgtactacctagttgtttatcctgacaactggtttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACCCGGAGGATCAGCGTGTGCAGAAGATGACATACCAACAATTCCTGGTTG
species | Oryza sativa |
transcript | LOC_Os01g16310.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCAAAGATCTACATAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAG GA-GCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACEST: gi|29679751|gb|CB676026.1|CB676026
genomic: CGCAAAGATCTACA-AAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAGgtactgaact ... ttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTAC
EST: GCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAG GAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACEST: gi|29641917|gb|CB646924.1|CB646924
genomic: GCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAGgtactgaact ... ttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTAC
EST: GCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAG GAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACEST: gi|88215912|gb|CI215761.1|CI215761
genomic: GCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAGgtactgaact ... ttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTAC
EST: GCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAG GAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTAC
genomic: GCGCAAAGATCTACAAAGCCTGGGAGTTCTACCGGATCCAGCTCGTCGAGgtactgaact ... ttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTAC
acagtattgtattgtactacctagttgtttatcctgacaactggtttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACCCGGAGGATCAGCGTGTGCAGAAGATGACATACCAACAATTCCTGGTTG
tcctgac putative branch site (score: 2)
tttcttctc putative PPT
attgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcccatttagaagtgattgcccatatattgtatcatgtttacacagtattgtattgtactacctagttgtttatcctgacaactggtttcttctcagGAGGCGGCGGAGAAGGGCCTTCCCGTGGCGCGGCACCTCTTCCTCCACTACCCGGAGGATCAGCGTGTGCAGAAGATGACATACCAACAATTCCTGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
cttgccc
- - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - atcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg