1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaacttcatcgatgttatggacagaattccaagaactcgcacatccattctgcttttgcaattcgccgattacaattctgtgctgaatgaatctggcagGTGTACGGGAGTTCAGTCCAGGGGAGGATCCTGCACGGCGGCTCGCCGACGGAGCTGATCACGAGCTACACGGAGTCGACGGGGAGGCCGCCGGCTCTTC
species | Oryza sativa |
transcript | LOC_Os01g16310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ccattctgcttttgcaattcgccgattacaattctgtgctgaatgaatctggcagGTGTACGGGAGTTCAGTCCAGGGGAGGATCCTGCACGGCGGCTCGCCGACGGAGCTGATCACGAGCTACACGGAGTCGACGGGGAGGCCGCCGGCTCTTC
attacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacttcatcgatgttatggacagaattccaagaactcgcacatccattctgcttttgcaattcgccgattacaattctgtgctgaatgaatctggcagGTGTACGGGAGTTCAGTCCAGGGGAGGATCCTGCACGGCGGCTCGCCGACGGAGCTGATCACGAGCTACACGGAGTCGACGGGGAGGCCGCCGGCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - cttcatc
- - - - - - -tgttatg
- - - - - - - - - - - - - - - caagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa