Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATCCAGAGTACATGCGCCACAACAGGAGAGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttcctatgtgccattaccacattactctgtcatgcaattgtaccatgagggtgtttgaaagatggtggtacatggtttgaagcttactgtgttctt...

Basic information

species Oryza sativa
transcript LOC_Os01g16030.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88662499|gb|CI470127.1|CI470127
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88510648|gb|CI438154.1|CI438154
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|86870888|gb|CI326714.1|CI326714
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88439804|gb|CI541361.1|CI541361
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88511231|gb|CI438737.1|CI438737
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88323630|gb|CI556261.1|CI556261
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88661093|gb|CI450226.1|CI450226
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|86526009|gb|CI166215.1|CI166215
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88510108|gb|CI437614.1|CI437614
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88475381|gb|CI412652.1|CI412652
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|396941528|gb|HO188737.1|HO188737
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88440306|gb|CI549187.1|CI549187
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88489531|gb|CI426803.1|CI426803
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|86825487|gb|CI360103.1|CI360103
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAAC-AG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88284844|gb|CI406290.1|CI406290
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88661493|gb|CI455632.1|CI455632
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88662713|gb|CI473255.1|CI473255
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88663339|gb|CI480406.1|CI480406
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88486537|gb|CI423808.1|CI423808
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATACCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88475737|gb|CI413008.1|CI413008
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88661880|gb|CI461762.1|CI461762
EST:     AGGGTTTATATGAGGCCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88289060|gb|CI520390.1|CI520390
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88475917|gb|CI413188.1|CI413188
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88518078|gb|CI445732.1|CI445732
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88486800|gb|CI424071.1|CI424071
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: gi|88512596|gb|CI440102.1|CI440102
EST:     AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG                         GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG