1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcaaaatattactgttagacagatgagagatagtttttcatttttgaaataatgcttgtaaagagagcaaatcaagttactgtttttctttgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTCGGGGGTCAAGACAAG
species | Oryza sativa |
transcript | LOC_Os01g16030.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|163929379|gb|EG713804.1|EG713804
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88341662|gb|CI641414.1|CI641414
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88339997|gb|CI650444.1|CI650444
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|66915825|gb|CX102673.1|CX102673
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGACTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88305327|gb|CI653053.1|CI653053
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|396941528|gb|HO188737.1|HO188737
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|163929270|gb|EG711031.1|EG711031
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88570756|gb|CI662129.1|CI662129
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88357962|gb|CI650698.1|CI650698
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88760986|gb|CI770542.1|CI770542
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88349175|gb|CI678148.1|CI678148
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88572261|gb|CI663832.1|CI663832
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88369043|gb|CI677620.1|CI677620
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTACCTTCACTGTCTGGGEST: gi|88742204|gb|CI765712.1|CI765712
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGEST: gi|88454148|gb|CI693823.1|CI693823
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
EST: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAG GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
genomic: TCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCAACAATAGgtaaaaacct ... tgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGG
gaaataatgcttgtaaagagagcaaatcaagttactgtttttctttgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTCGGGGGTCAAGACAAG
ctttgat putative branch site (score: 5)
ttactgtttttcttt CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaatattactgttagacagatgagagatagtttttcatttttgaaataatgcttgtaaagagagcaaatcaagttactgtttttctttgatgtctagGGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTCGGGGGTCAAGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC