1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attatgttaccaaccctacttccaatttttaacatcacaaagtagaacagaaatcaagtttccaagccgctttaacactcctctctttgccccctcgcagCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCGGTGG
species | Oryza sativa |
transcript | LOC_Os01g13170.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAG CACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCEST: gi|87019226|gb|CI279736.1|CI279736
genomic: TTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGgtaatatttt ... cccctcgcagCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATC
EST: ACGATGCTCTACTCACTTCGGCGGCCTCCAGAG CACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATC
genomic: ACGATGCTCTACTCACTTCGGCGGCCTCCAGAGgtaatatttt ... cccctcgcagCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATC
aacagaaatcaagtttccaagccgctttaacactcctctctttgccccctcgcagCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCGGTGG
ctttaac putative branch site (score: 21)
ctttaacactcctctc CT-rich tract
aaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatgttaccaaccctacttccaatttttaacatcacaaagtagaacagaaatcaagtttccaagccgctttaacactcctctctttgccccctcgcagCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-ttatgtt
- - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgctt