1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgtaattggtcacttttgagcataaattaacatcctcagtaatgtcattgtttggttgtattatcactattgatcgtaatttttatccatatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTATTC
species | Oryza sativa |
transcript | LOC_Os01g12860.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATG GCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAEST: gi|88996765|gb|CI389431.1|CI389431
genomic: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATGgtacgcggca ... tatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCA
EST: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATG GCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAEST: gi|88902589|gb|CI088127.1|CI088127
genomic: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATGgtacgcggca ... tatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCA
EST: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATG GCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAEST: gi|89171246|gb|CI109770.1|CI109770
genomic: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATGgtacgcggca ... tatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCA
EST: AGATGCCAAGAAGGAACCAGGGACAACCAAAT-GCCAAACGAAAATCATG GCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAEST: gi|88289898|gb|CI525230.1|CI525230
genomic: AGATGCCAAGAAGGAACCAGGGACAACCAAATTGC-AAACAAAAATCATGgtacgcggca ... tatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCA
EST: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATG GCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCA
genomic: CAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATGgtacgcggca ... tatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCA
tcattgtttggttgtattatcactattgatcgtaatttttatccatatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTATTC
tattgat putative branch site (score: 2)
tatttttc putative PPT
taatttttatccatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtaattggtcacttttgagcataaattaacatcctcagtaatgtcattgtttggttgtattatcactattgatcgtaatttttatccatatttttcagGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - -agcataa
- - - - - - - - - - - - - - - -catcctc
- - - - - - - - - - - - - - - - - - - - - - - - ttgtttg