1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTAGCTTGTATAGTTGAGATGGAAAAGGAGAATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttactaacaatttagtaactgaatctcctttcattggtttatttttcacagcaacaatcacaattgcctacacctagtcattcctgcaactatac...
species | Oryza sativa |
transcript | LOC_Os01g11590.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88285948|gb|CI512605.1|CI512605
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|86503409|gb|CI146042.1|CI146042
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|86493851|gb|CI136484.1|CI136484
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|86504299|gb|CI146932.1|CI146932
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88418714|gb|CI506475.1|CI506475
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|29685008|gb|CB681283.1|CB681283
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: TCAAGCTTGAATGGCTAGTATCTCACGCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|87019245|gb|CI279755.1|CI279755
genomic: TCAAGCTTGAATGGCTAG-ATCTCAC-CTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88292773|gb|CI505352.1|CI505352
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88303568|gb|CI508174.1|CI508174
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88418742|gb|CI506503.1|CI506503
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATGTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88563670|gb|CI494387.1|CI494387
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGGTAGATCTCACCTGAAGAAAAAAGAGGATTGGAG CTTTGCCAAATTGCTGCACGATAANTGAAGCGCCAACCATTGGGACAACCGEST: gi|88563238|gb|CI493955.1|CI493955
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: AAAAA-AGAATT-GAGG CTTTGCCNAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCEST: gi|88462351|gb|CI512016.1|CI512016
genomic: AAAAAGAGAATTGGA-Ggtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACC
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTNCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88464783|gb|CI512088.1|CI512088
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGGTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|29663498|gb|CB659773.1|CB659773
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88257898|gb|CI360484.1|CI360484
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTG-ATGGCTATATCTCACCTGAAGGAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88567451|gb|CI498168.1|CI498168
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTTAAGCGCCAACCATTGGGACAACCAEST: gi|88567515|gb|CI498232.1|CI498232
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATTGCTAGATCTCACCTGAAGAAGAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|88567495|gb|CI498212.1|CI498212
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG GEST: gi|88567495|gb|CI498212.1|CI498212
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcag-
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG GEST: gi|88438085|gb|CI536244.1|CI536244
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcag-
EST: TTCAAGGCTTGAATGGGTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCAEST: gi|29663497|gb|CB659772.1|CB659772
genomic: TTCAA-GCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
EST: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAG CTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
genomic: ATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttact ... tgaatatcagCTTTGCCAAATTGCTGCACGATAAGTGAAGCGCCAACCATTGGGACAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGCTTGTATAGTTGAGATGGAAAAGGAGAATTCAAGCTTGAATGGCTAGATCTCACCTGAAGAAAAAAGAGAATTGGAGgtactttactaacaatttagtaactgaatctcctttcattggtttatttttcacagcaacaatcacaattgcctacacctagtcattcctgcaactatac
- - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG