1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttacaatgacaaatgaagaatactttgtagctacatgactactagtctaagaatattttgatgctacatgaataagatgttacttttttatgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAG
species | Oryza sativa |
transcript | LOC_Os01g11590.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATG GTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAGGTGCAEST: gi|86493851|gb|CI136484.1|CI136484
genomic: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATGgtaaagttgt ... tgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTC------G--
EST: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATG GTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAGGTGCAEST: gi|86504299|gb|CI146932.1|CI146932
genomic: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATGgtaaagttgt ... tgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTC------G--
EST: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATG GTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAGGTGCAEST: gi|29685008|gb|CB681283.1|CB681283
genomic: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATGgtaaagttgt ... tgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTC------G--
EST: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATG GTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAGEST: gi|29663498|gb|CB659773.1|CB659773
genomic: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATGgtaaagttgt ... tgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAG
EST: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATG GTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAGGTGCAEST: gi|29663497|gb|CB659772.1|CB659772
genomic: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATGgtaaagttgt ... tgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTC------G--
EST: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATG GTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAGGTGCA
genomic: GGTCCATTTAACTACCCAGCTCGTGATGAAGCTGGTATACCCCGAGAATGgtaaagttgt ... tgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTC------G--
tctaagaatattttgatgctacatgaataagatgttacttttttatgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAG
ttttgat putative branch site (score: 14)
cttttttat putative PPT
aataagatgttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaatgacaaatgaagaatactttgtagctacatgactactagtctaagaatattttgatgctacatgaataagatgttacttttttatgttatgcagGTATCAAGAGAAGTTCAAACATGAAACGCCAAGTAAACTTTCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - gaagaata
- - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaat