1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttcagtgttagctcctttgtggattgcaacaaaccactagttaagtcatctactacacattgcatgttgatgacactaaagtggattgtgttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGCATCCATGCAAACATGCTGCTGTGATGAAAAAGATCATTGATGTTCTAA
species | Oryza sativa |
transcript | LOC_Os01g10290.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCCCGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|88830849|gb|CI079283.1|CI079283
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|88226114|gb|CI226030.1|CI226030
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|86870218|gb|CI319324.1|CI319324
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: TGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACCTTGTCAGCAGGCAAGCATNCTTCAGTEST: gi|55440203|gb|CV733411.1|CV733411
genomic: TGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCA-CTTGTCAGCAGGCAAGCATGCTTCAGT
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|86889035|gb|CI314651.1|CI314651
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: TGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|86497450|gb|CI140083.1|CI140083
genomic: TGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|29686213|gb|CB682488.1|CB682488
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGEST: gi|87015628|gb|CI277586.1|CI277586
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
EST: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACG GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
genomic: AGCCTGAACTTGTGTTTGAAGATATCAGCCAAGATCATGCACGGAAGACGgtactttcat ... gttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTG
gtcatctactacacattgcatgttgatgacactaaagtggattgtgttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGCATCCATGCAAACATGCTGCTGTGATGAAAAAGATCATTGATGTTCTAA
cactaaa putative branch site (score: 27)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagtgttagctcctttgtggattgcaacaaaccactagttaagtcatctactacacattgcatgttgatgacactaaagtggattgtgttgccacagGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGCATCCATGCAAACATGCTGCTGTGATGAAAAAGATCATTGATGTTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA