1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctcttttatttgatcttcatgctttttaagtcttttgttagttggttagtattagttgccttattatgtgttattagtttccatattatcttcct...
species | Oryza sativa |
transcript | LOC_Os01g10290.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTGCCAAACCCCCCGTGTCTGGCTTACCGGATATGATGAEST: gi|55440203|gb|CV733411.1|CV733411
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAEST: gi|86497450|gb|CI140083.1|CI140083
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAEST: gi|29686213|gb|CB682488.1|CB682488
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAEST: gi|87015628|gb|CI277586.1|CI277586
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctcttttatttgatcttcatgctttttaagtcttttgttagttggttagtattagttgccttattatgtgttattagtttccatattatcttcct
- - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGATG